PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G1646
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 399aa    MW: 46022.2 Da    PI: 4.375
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G1646genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.12e-17168252286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt++e+ +L++a  ++  r +r++l+   W+ev++k++e  ++er+ +qC+++++ l+k+ykk+k++  + t ++ss+++yf++++
  Gh_A06G1646 168 WTERETFVLLDAWGDLFLRRGRKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKEKAMLAE-TGGTSSKWVYFKKMD 252
                  *************************************762678**************************9.699999********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-22167254No hitNo description
Gene3DG3DSA:1.10.10.608.5E-5168232IPR009057Homeodomain-like
PROSITE profilePS500906.481168225IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDNVEDNARH PSNPYDVGHQ PGYGSSNHQK LSVRNNPYVR PTGNQYVVDD EEEEEEENDE  60
DLEEEENRNR NNGVRYVGKD MDDVDDDDND ELDDEEDGDE DDYDENGDKQ KGYDGKNDDV  120
DMERHPKKRK LKSLLSSYEF APRVPAPAVS APSVPKPSFG GRNSLTDWTE RETFVLLDAW  180
GDLFLRRGRK SLRSEEWQEV AEKVSEVSKI ERTDTQCRNR LDTLKKKYKK EKAMLAETGG  240
TSSKWVYFKK MDMLMSTPPQ QGGLSCGLDS GEYVFMNPRV YLNRANGLDE MRDSPADSDS  300
ADSEEDVSDG LPPKKRKFGR QYDEGCSFRL LADLIQKFSD TYEKIEDSKR QQMLELEKMR  360
MDFHRELEMQ KQHIMERAQA EIAKIQQQAD DDENEKASG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449978.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A0D2UJF00.0A0A0D2UJF0_G
STRINGVIT_09s0002g04700.t011e-150(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15605916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.17e-59Trihelix family protein